Package index • qraLm

All functions

DRForModel(): Dose-response model function for the qraLm models

Lot2LotGen(): Generation of contaminated lots with variability in prevalence and concentration

LotGen(): Generation of contaminated lots

RiskEurope(): Risk Europe

caBrush(): Cleaning cantaloupes by brushing

caDicing(): Dicing of cantaloupe for preparation of RTE pre-cut cantaloupe

caFlumeTank(): Cantaloupe washing in flume tank

caFlumeTankCC(): Cantaloupe cross-contamination during washing in flume tank

caGrowthBaranyi(): Growth of L. monocytogenes in cantaloupe flesh

caHarvestCC(): Cross-contamination of cantaloupe rind by L. monocytogenes during harvest

caHoldingTime(): Holding time of cantaloupes post-harvest

caHomeRTE(): Storage of RTE diced cantaloupe packs at home

caIrrig2rind(): Route of contamination of cantaloupe from irrigation water to rind

caPartitioningCC(): Cross-contamination of cantaloupe during dicing and partitioning into packed units

caPrimaryProduction(): Contamination of cantaloupe rind from soil and irrigation water

caRet2HomeRTE(): Transport of RTE diced cantaloupe packs from retail to home

caRetRTE(): Display of RTE diced cantaloupe packs at retail

caSoil2rind(): Route of contamination of cantaloupe from soil to rind

caTesting(): Application of a testing regime for L. monocytogenes in a sample of RTE cantaloupe from a lot/sublot

caTrans2RetRTE(): Transport of RTE diced cantaloupe packs from the end of processing to retail

expandedjamesonC(): Integrate the growth model with Jameson effect

expandedjamesonC_set_params(): Set the parameters to integrate the growth model with Jameson effect

fvBlanching(): Effect of blanching on L. monocytogenes in processed vegetables

fvCooking(): Microbial reduction due to cooking at home

fvDefrost(): Defrosting of frozen vegetables at home

fvPartitioningCC(): Cross-contamination during freezing/packaging and partitioning into packed units

fvPortioning(): Portioning of the contents of a pack at home

fvReductionPostpack(): Effect of a potential intervention step post-packaging

fvTesting() sfTesting(): Application of a testing regime for L. monocytogenes in a sample of food units from a lot

plotLotRisk.qraLm(): Generic plot function for risk

plotLotsECDF.qraLm(): Plot the Empirical Cumulative Distribution Function (ECDF) of CFU/g in a contaminated lot

plotRisk.qraLm(): Generic plot function for risk per serving

plotUnitsECDF.qraLm(): plotUnitsECDF Generic plot function to plot the ECDF

printMC.qraLm(): Generic print function to print the MC results

printPrevContUnits.qraLm(): printPrevContUnits function to print the prevalence of contaminated units

runExample(): Shiny application for qraLm package

sfBrineORsaltCC(): Cross-contamination of fish fillets during brine injection or dry-salting

sfCharacteristics(): Sampling of the RTE smoked fish characteristics

sfColdChain(): Cold chain logistics for ready-to-eat seafood

sfGrowthJameson(): Growth model of L. monocytogenes in RTE seafood including background flora competition

sfGrowthLPD(): Growth of L. monocytogenes in raw fish

sfMaceration(): Reduction of L. monocytogenes due to maceration of fish fillets with gravlax curing agents

sfMejlholmDalgaard(): Secondary growth rate model of L. monocytogenes in RTE seafood

sfMejlholmDalgaardLAB(): Secondary growth rate model of Lactic Acid Bacteria (LAB) in RTE seafood

sfPackaging(): Packaging of slices of ready-to-eat seafood

sfPortioning(): Portioning of the contents of a seafood pack at home

sfRawFishStorage(): Storage of raw fish (whole or fillets) during processing

sfSlicer(): Cross-contamination during slicing of raw fish or processed fillets

sfSmearingCC(): External cross-contamination of fish fillets during smearing with salt, sugar or spices

sfSmoking(): Reduction of L. monocytogenes due to smoking brined or dry-salted fish

summaryLot.qraLm(): summaryLot Generic print function to print the between lots MC summary statistics

summaryRiskLot.qraLm(): summaryRiskLot generic function to print the risk summary statistics at lot level

summaryRiskServings.qraLm(): summaryRiskServings generic function to print the risk summary statistics

summaryServings.qraLm(): summaryServings Generic function to print the within lots (between servings) MC summary statistics

summaryUnits.qraLm(): summaryUnits Generic function to print the within lots (between units) MC summary statistics